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Same problem. Here is my cmake output: http://pastebin.com/q54ksL3m
OS: Ubuntu 13.04 SIGSEGV (0xb) at pc=0x00007ffb5b272734, pid=20682, tid=140717852280640
JRE version: 7.0_25-b30 Java VM: OpenJDK 64-Bit Server VM (23.7-b01 mixed mode linux-amd64 compressed oops) Problematic frame: C [libopencv_java246.so+0x34f734] cv::Mutex::~Mutex()+0x14