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Java bindings missing a lot of stuff?

I was under the impression that since the Java bindings were autogenerated from the C++ library, everything would be available. However, there seems to be quite a bit of things missing, for example FLANN and BOW-related stuff.

What is the best approach for dealing with this?

My questions are

  1. Why is stuff missing?
  2. Is it possible to recompile the library but while generating more of the bindings?
  3. Is there any good guide on how one can "easily" use JNI to access the missing portions?

Also, I think there should be a warning on the OpenCV Java-download page that the included bindings are not complete.