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+++ UPDATE +++

As boaz001 suggested, I cleaned out my build directory and ran CMake again. (I uploaded the text output after each Configure step (#1, #2, and #3), again after the Generate step, and also the CMakeError.log and CMakeOutput.log files to Dropbox.

I then opened the solution in Visual Studio and built it, yielding the same "project modified outside the environment" messages. As Tetragramm suggested I hit Reload All and then F7 to build the solution again. With each iteration I got closer to getting everything to build.

On the last run I got Build: 63 succeeded, 3 failed, 27 up-to-date, 35 skipped. As I review the output, it seems to be having some problem linking to Qt. Here's the log of the most recent build.

I was thinking this might be a problem with Qt not being in the %PATH%, so I checked and do see C:\Qt\5.5\mingw492_32\bin in the path and all the .dll files in that location.

Any further thoughts?