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It's already been a while since the question was asked, but somehow I still had it as an open tab here on my browser...
So, the problem here is, that you try to compare a list of contours with another list of contours, which is not possible. If you know that you have each time only one contour, try it with: cv2.matchShapes(contours[0],contours2[0],cv2.cv.CV_CONTOURS_MATCH_I1,0)
