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You are only installing the contrib package . Not the whole library. Try this :

sudo apt-get install build-essential

sudo apt-get install cmake git libgtk2.0-dev pkg-config libavcodec-dev libavformat-dev libswscale-dev

sudo mkdir /opt/opencv-3.1.0

cd /opt/opencv-3.1.0

sudo git clone https://github.com/Itseez/opencv.git

sudo git clone https://github.com/Itseez/opencv_contrib.git

cd /opt/opencv-3.1.0/opencv sudo git checkout 3.1.0

cd /opt/opencv-3.1.0/opencv_contrib sudo git checkout 3.1.0

sudo mkdir /opt/opencv-3.1.0/opencv/release

cd /opt/opencv-3.1.0/opencv/release

sudo apt-get install qt5-default

sudo cmake -D CMAKE_BUILD_TYPE=RELEASE -DWITH_OPENGL=ON -DWITH_QT=ON -D CMAKE_INSTALL_PREFIX=/usr/local -D OPENCV_EXTRA_MODULES_PATH=/opt/opencv-3.1.0/opencv_contrib/modules ..

sudo make

sudo make install

pkg-config --modversion opencv