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Accoding to the header file the version in OpenCV is based on 1.6.10.

#define FLANN_VERSION_ "1.6.10"

That being said, if you want to dig into nn-search methods I recommend to use the original FLANN version - not the version shipped with OpenCV, because the latter is the dark side of OpenCV. E.g. there are many wrappers around FLANN's types and confusingly named objects and namespaces. I found it a pain to use.

However, if you just want to use the FlannBasedMatcher the OpenCV version is fine.

Accoding According to the header file the version in OpenCV is based on 1.6.10.1.6.10:

#define FLANN_VERSION_ "1.6.10"

That being said, if you want to dig into nn-search methods I recommend to use the original FLANN version - not the version shipped with OpenCV, because the latter is the dark side of OpenCV. E.g. there are many wrappers around FLANN's types and confusingly named objects and namespaces. I found it a pain to use.

However, if you just want to use the FlannBasedMatcher the OpenCV version is fine.