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Avoid grey hair, don't try to combine distribution 2.4.13 and 3.1.0. Amongst several issues pertaining to Java wrapper build script written in Python these distributions are incompatible. Someone skilled enough in Python and Java can easily rewrite or write their own scripts to create a middle ground of the versions, however that's beyond my capabilities.
It also seems like the downloadable zips from github are a better choice than to clone. But that's just my experience.
My solution therefore is to use each distribution in their own projects (I'm using Java) and make global import of both versions but only refer to one specific for each of the projects
