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Had the same problem, in my case it's because cmake-gui detected eigen2 instead of eigen3 . So in cmake-gui i just changed EIGEN_INCLUDE_PATH from /usr/include/eigen3 to /usr/include/eigen2 then it worked, it compiled successfully opencv 3.0.0-rc1 (it's not the latest commit, i first ran git checkout 3.0.0-rc1).
