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There indeed little info on MSER available. You can try to use this page.
The more important question is: are you really really sure you want to use MSER for solving your problem? MSER is an algorithm for image processing, and the question you are trying to solve does not belong to this field. MSER was designed to work with 2D arrays. Algorithms for analizing 2D arrays are MUCH more complicate than the ones working with 1D arrays. Algorithm from appropriate field will be faster and more robust. You can try for example algorithms for histogram analysis, and histogram auto-thresholding.
