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When I tried to build OpenCV 2.4.3 with CUDA support I had problems because nvcc wanted to work with Visual Studio 9 or 10. I have used the latest NVidia CUDA toolkit, version 5.0. Accordingly here NVidia states that Microsoft Visual Studio 2008 or 2010 is a requirement.

After I have downgraded to Visual C++ 2010 Express and I could build OpenCV completely. So if you plan to work with CUDA you may not use the VS 2012 until NVidia updates its CUDA toolkit.