You have two independent versions of OpenCV. The first is linked against libCoreVision statically. The second is libopencv_java that is linked against integration library dynamically. The problem appears when you try to put some OpenCV object from one library to another. The root of strange crashes may be different versions of STL or different compiler options. To solve the problem you need to use the same shared library in both cases.
Java machine does not load dependent libs from libs directory in your package. You need to load all your libs in reverse order to satisfy all dependencies. Move all System.LoadLibrary() calls to onManagerConnected() callback to load all your libs after OpenCV initialization.
