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One way to solve this issue is,

• Rotate both input image by 90 degree.
• Perform stitching.
• Finally rotate back the result.

See the result I got with the above, here I rotated image manually, you can use transpose or warpAffine to rotate the image.

One way to solve this issue is,As the horizontal stitching gives satisfactory result, you can try that way, like

• Rotate both input image by 90 degree.
• Perform stitching.
• Finally rotate back the result.

See the result I got with the above, here I rotated image manually, you can use transpose or warpAffine to rotate the image.