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So the reason it does not work is because you running 3.1.0 which is a version that does not contain the update cmdlineparser interface for handling arguments, as you can see here,

To solve this either go to version 3.2 at least OR use the following command

opencv_annotation -annotations /home/haider/Desktop/images/file.txt -images /home/haider/Dekstop/images/

So the reason it does not work is because you running 3.1.0 which is a version that does not contain the update cmdlineparser interface for handling arguments, as you can see here,

To solve this either go to version 3.2 at least OR use the following command

opencv_annotation -annotations /home/haider/Desktop/images/file.txt -images /home/haider/Dekstop/images/

which is still the old form of handling arguments.