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How to find a "contour" of 3d object?

I have a set of images that a taken from single point of view but with different focal length, kinda like computer tomography slices. So by stacking them up I can form 3d image of object.

I need to find a "contour" of 3d objects. For now i see only brute force way: stack images in 3d cvMatND, do X, Y and Z slices and use cvFindContours().

Is there more intelligent way to do this?