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hdf5.h no such file or directory

asked 2017-03-07 09:20:47 -0500

chaiein gravatar image

On make install of opencv 3.2.0 after 98% In file included from /home/chaiein/VR/opencv-3.2.0/build/modules/python2/pyopencv_generated_include.h:12:0, from /home/chaiein/VR/opencv-3.2.0/modules/python/src2/cv2.cpp:12: /home/chaiein/VR/opencv_contrib-3.1.0/modules/hdf/include/opencv2/hdf/hdf5.hpp:4 fatal error: hdf5.h: No such file or directory compilation terminated. modules/python2/CMakeFiles/opencv_python2.dir/build.make:305: recipe for target 'modules/python2/CMakeFiles/opencv_python2.dir/__/src2/cv2.cpp.o' failed make[2]: * [modules/python2/CMakeFiles/opencv_python2.dir/__/src2/cv2.cpp.o] Error 1 CMakeFiles/Makefile2:14169: recipe for target 'modules/python2/CMakeFiles/opencv_python2.dir/all' failed make[1]: [modules/python2/CMakeFiles/opencv_python2.dir/all] Error 2 Makefile:160: recipe for target 'all' failed make: ** [all] Error 2

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could you add the cmake output ?

berak gravatar imageberak ( 2017-03-07 09:50:32 -0500 )edit

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answered 2018-07-12 08:42:39 -0500

kishan patel gravatar image

updated 2018-07-12 08:43:56 -0500

Cmake output as below:

-- General configuration for OpenCV 3.1.0 =====================================

-- Version control: unknown

-- Platform: -- Host: Linux 4.4.0-130-generic x86_64 -- CMake: 3.5.1 -- CMake generator: Unix Makefiles -- CMake build tool: /usr/bin/make

-- Configuration: RELEASE

-- C/C++: -- Built as dynamic libs?: YES -- C++ Compiler: /usr/bin/c++ (ver 5.4.0) -- C++ flags (Release): -fsigned-char -W -Wall -Werror=return-type -Werror=non-virtual-dtor -Werror=address -Werror=sequence-point -Wformat -Werror=format-security -Wmissing-declarations -Wundef -Winit-self -Wpointer-arith -Wshadow -Wsign-promo -Wno-narrowing -Wno-delete-non-virtual-dtor -fdiagnostics-show-option -Wno-long-long -pthread -fomit-frame-pointer -msse -msse2 -mno-avx -msse3 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -ffunction-sections -fvisibility=hidden -fvisibility-inlines-hidden -O3 -DNDEBUG -DNDEBUG -- C++ flags (Debug): -fsigned-char -W -Wall -Werror=return-type -Werror=non-virtual-dtor -Werror=address -Werror=sequence-point -Wformat -Werror=format-security -Wmissing-declarations -Wundef -Winit-self -Wpointer-arith -Wshadow -Wsign-promo -Wno-narrowing -Wno-delete-non-virtual-dtor -fdiagnostics-show-option -Wno-long-long -pthread -fomit-frame-pointer -msse -msse2 -mno-avx -msse3 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -ffunction-sections -fvisibility=hidden -fvisibility-inlines-hidden -g -O0 -DDEBUG -D_DEBUG -- C Compiler: /usr/bin/cc -- C flags (Release): -fsigned-char -W -Wall -Werror=return-type -Werror=non-virtual-dtor -Werror=address -Werror=sequence-point -Wformat -Werror=format-security -Wmissing-declarations -Wmissing-prototypes -Wstrict-prototypes -Wundef -Winit-self -Wpointer-arith -Wshadow -Wno-narrowing -fdiagnostics-show-option -Wno-long-long -pthread -fomit-frame-pointer -msse -msse2 -mno-avx -msse3 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -ffunction-sections -fvisibility=hidden -O3 -DNDEBUG -DNDEBUG -- C flags (Debug): -fsigned-char -W -Wall -Werror=return-type -Werror=non-virtual-dtor -Werror=address -Werror=sequence-point -Wformat -Werror=format-security -Wmissing-declarations -Wmissing-prototypes -Wstrict-prototypes -Wundef -Winit-self -Wpointer-arith -Wshadow -Wno-narrowing -fdiagnostics-show-option -Wno-long-long -pthread -fomit-frame-pointer -msse -msse2 -mno-avx -msse3 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -ffunction-sections -fvisibility=hidden -g -O0 -DDEBUG -D_DEBUG -- Linker flags (Release): -- Linker flags (Debug): -- Precompiled headers: YES -- Extra dependencies: /usr/lib/x86_64-linux-gnu/libpng.so /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libjasper.so /usr/lib/x86_64-linux-gnu/libjpeg.so /usr/lib/x86_64-linux-gnu/libImath.so /usr/lib/x86_64-linux-gnu/libIlmImf.so /usr/lib/x86_64-linux-gnu/libIex.so /usr/lib/x86_64-linux-gnu/libHalf.so /usr/lib/x86_64-linux-gnu/libIlmThread.so gtk-3 gdk-3 pangocairo-1.0 pango-1.0 atk-1.0 cairo-gobject cairo gdk_pixbuf-2.0 gio-2.0 gstvideo-0.10 gstapp-0.10 gstbase-0.10 gstriff-0.10 gstpbutils-0.10 gstreamer-0.10 gobject-2.0 gmodule-2.0 gthread-2.0 glib-2.0 xml2 dc1394 v4l1 v4l2 avcodec avformat avutil swscale gphoto2 gphoto2_port exif /usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.so /usr/lib/x86_64-linux-gnu/libpthread.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.so /usr/lib/x86_64-linux-gnu/libm.so correspondence multiview numeric glog gflags dl m pthread rt

-- 3rdparty dependencies: libwebp

-- OpenCV modules: -- To be built: core flann hdf imgproc ml photo reg surface_matching video dnn fuzzy imgcodecs shape videoio highgui objdetect plot superres ts xobjdetect xphoto bgsegm bioinspired dpm face features2d line_descriptor saliency text calib3d ccalib datasets java rgbd stereo structured_light tracking videostab xfeatures2d ximgproc aruco optflow sfm stitching python2 python3 -- Disabled: world contrib_world -- Disabled by dependency: -

-- Unavailable: cudaarithm cudabgsegm cudacodec cudafeatures2d cudafilters cudaimgproc cudalegacy cudaobjdetect cudaoptflow cudastereo cudawarping cudev viz cvv matlab

-- GUI: -- QT: NO -- GTK+ 3.x: YES (ver 3.18.9) -- GThread : YES (ver 2.48.2) -- GtkGlExt: NO -- OpenGL support: NO

-- VTK support: NO

-- Media I/O: -- ZLib: /usr/lib/x86_64-linux-gnu/libz.so (ver 1.2.8) -- JPEG: /usr/lib/x86_64-linux-gnu/libjpeg ... (more)

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Asked: 2017-03-07 09:20:47 -0500

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Last updated: Jul 12